FFmpeg 6.0.1
Since* 1.0
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Add or replace the alpha component of the primary input with the grayscale value of a second input. This is intended for use with alphaextract to allow the transmission or storage of frame sequences that have alpha in a format that doesn’t support an alpha channel.

For example, to reconstruct full frames from a normal YUV-encoded video and a separate video created with alphaextract, you might use:

movie=in_alpha.mkv [alpha]; [in][alpha] alphamerge [out]